signifOTU {MCMC.OTU}

Finds differentially represented OTUs.

Description

Trawls otuWise summary tables in the data returned by OTUsummary and returns the names of OTUs that have p-values better than the specified cutoff.

Usage

signifOTU(otu.summary, p.cutoff=0.05)

Arguments

otu.summary

The output of OTUsummary function.

p.cutoff

p-value cutoff to report OTUs.

Value

A vector of significant OTUs.

Author(s)

Mikhail V. Matz, University of Texas at Austin <[e-mail]>

References

Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/