signifOTU {MCMC.OTU} | R Documentation |
Finds differentially represented OTUs.
Description
Trawls otuWise summary tables in the data returned by OTUsummary and returns the names of OTUs that have p-values better than the specified cutoff.
Usage
signifOTU(otu.summary, p.cutoff=0.05)
Arguments
otu.summary |
The output of OTUsummary function. |
p.cutoff |
p-value cutoff to report OTUs. |
Value
A vector of significant OTUs.
Author(s)
Mikhail V. Matz, University of Texas at Austin <matz@utexas.edu>
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
[Package MCMC.OTU version 1.0.10 Index]