padjustOTU {MCMC.OTU} | R Documentation |
Adjusts p-values in the OTU summary for multiple comparisons.
Description
Collects all p-values from the summary, performs FDR correction (Benjamini-Hochberg), returns the summary with adjusted p-values.
Usage
padjustOTU(otu.summary, method="BH")
Arguments
otu.summary |
The output of OTUsummary function. |
method |
Method of adjustment for multiple comparisons (see ?p.adjust) |
Value
An OTU summary list (see ?OTUsummary) with adjusted p-values
Author(s)
Mikhail V. Matz, University of Texas at Austin <matz@utexas.edu>
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
[Package MCMC.OTU version 1.0.10 Index]