padjustOTU {MCMC.OTU}

Adjusts p-values in the OTU summary for multiple comparisons.

Description

Collects all p-values from the summary, performs FDR correction (Benjamini-Hochberg), returns the summary with adjusted p-values.

Usage

padjustOTU(otu.summary, method="BH")

Arguments

otu.summary

The output of OTUsummary function.

method

Method of adjustment for multiple comparisons (see ?p.adjust)

Value

An OTU summary list (see ?OTUsummary) with adjusted p-values

Author(s)

Mikhail V. Matz, University of Texas at Austin <[e-mail]>

References

Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/