otuByAutocorr {MCMC.OTU}

Selects OTUs for which MCMC-based parameter estimates are reliable.

Description

Looks at autocorrelation among sampled parameter values.

Usage

otuByAutocorr(model, data, ac.cut=0.1)

Arguments

model

Model generated by mcmc.otu()

data

Dataset used to fit the model

ac.cut

Autocorrelation cutoff

Value

Vector of OTU names for which autocorrelation is less than ac.cut argument.

Author(s)

Mikhail V. Matz, University of Texas at Austin <[e-mail]>

References

Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/