importMzMl {MALDIquantForeign}

Import mzML files

Description

This function imports files in mzML file format into MassSpectrum-class or MassPeaks-class objects.

Usage

importMzMl(path, ...)

Arguments

path

character, path to directory or file which should be read in.

...

arguments to be passed to import.

Value

a list of MassSpectrum-class or MassPeaks-class objects (depending on the centroided argument).

Author(s)

Sebastian Gibb

References

https://strimmerlab.github.io/software/maldiquant/,
Definition of mzML format: https://www.psidev.info/mzML

See Also

MassSpectrum-class, MassPeaks-class

Examples

library("MALDIquant")
library("MALDIquantForeign")

## get example directory
exampleDirectory <- system.file("exampledata", package="MALDIquantForeign")

## import
s <- importMzMl(exampleDirectory)