importCdf {MALDIquantForeign}

Import CDF files

Description

This function imports files in NetCDF file format into MassSpectrum-class or MassPeaks-class objects.
Please note that the RNetCDF is needed.

Usage

importCdf(path, ...)

Arguments

path

character, path to directory or file which should be read in.

...

arguments to be passed to import.

Value

a list of MassSpectrum-class or MassPeaks-class objects (depending on the centroided argument).

Author(s)

Sebastian Gibb

References

https://strimmerlab.github.io/software/maldiquant/

See Also

MassSpectrum-class, MassPeaks-class

Examples

library("MALDIquant")
library("MALDIquantForeign")

## get example directory
exampleDirectory <- system.file("exampledata", package="MALDIquantForeign")

## import
if (requireNamespace("RNetCDF", quietly=TRUE)) {
  s <- importCdf(exampleDirectory)
} else {
  message("You have to install the RNetCDF package to use importCdf.")
}