calculate_PPIscore | Calculate Pairwise Protein Profile Similarity using Different Metrics |
cluster_tuning | ClusterONE Hyperparameters Tuning |
Clust_Valid | Cluster Evaluation by External Measures |
data_filtering | Data Filtering |
EliminateCpxRedundance | Hierarchical Clustering of Modules |
enrichmentCPX | Functional Enrichment Analysis for Predicted Complexes |
ensemble_model | Predict Interactions via Ensemble Learning Method |
exampleData | Demo CF-MS data |
generate_refInt | Generate Class Labels for Data Input Based on Gold Reference Set |
getCPX | Fetch Complexes from the CORUM Database |
get_clusters | Predict Complexes |
get_DenoisedNet | Denoising Predicted Protein-Protein Interactions |
impute_MissingData | Impute missing Values in Elution Profile Matrix |
keepMT | Keep Mitochondrial (mt) Proteins |
MCL_clustering | MCL clustering |
MCL_tuning | MCL Hyperparameters Tuning |
orthMappingCpx | Protein Complex Ortholog Mapping |
predPPI_MACP | Predict Protein-Protein Interactions and Putative Complexes |
refcpx | CORUM reference complexes |
scaling | Column and Row-wise Normalization |
subcellular.mtPPI | Keep Mitochondrial (mt) Proteins |