| func_li08 {LoopDetectR} | R Documentation |
Example ODE function: bacterial cell cycle.
Description
The file contains the function definition an ordinary differential equation model of Caulobacter crescentus cell cycle as proposed by Li et al., 2008. It has 18 variables.
Usage
func_li08
Format
R file with definition of function func_li08 that takes as input arguments time t (dimension 1), and variable values y (dimension 18). the kinetic parameters are defined within the function.
Details
The Caulobacter cell cycle model function will only give the solution as shown in the publication [Li et al., 2008] if the change in variables at defined events are taken into account. Please refer to the original reference for details.
Source
The Caulobacter cell cycle model was proposed in Li S, Brazhnik P, Sobral B, Tyson JJ. A Quantitative Study of the Division Cycle of Caulobacter crescentus Stalked Cells. Plos Comput Biol. 2008;4(1):e9. The function corresponds to the MATLAB function modelwtin(t,y) as given on http://mpf.biol.vt.edu/research/caulobacter/SWST/pp/.