normalization_calculator {LipidomicsR}

normalization_calculator()

Description

A function uses normalization parameters to calculate normalized lipidomic data.

Usage

normalization_calculator(
  data,
  normalization.mode,
  normalization.index,
  delete.pattern = c("_\\d", "(\\+)AcO", "_n", "\\(\\d+\\)"),
  group,
  to
)

Arguments

data

Data frame. Row lipidomic data.

normalization.mode

Vector. Options can be 'absolute', 'relative', 'TSA', 'toGroup'.

normalization.index

Data frame. normalization parameters, Suggested to be calculated by noridx.ouput()

delete.pattern

Pattern of characters that needs to be removed.

group

Vector. The group information, recommended to be generated with groupXpert()

to

Character. The group to be normalized to.

Value

A data frame of normalized data if either 'relative' or 'absolute' mode is used. A list if both of them are used.