plotLipids {LipidMS} | R Documentation |
Plot informative peaks for lipid annotation
Description
Plot informative peaks for each lipid annotated with idPOS and idNEG (or similar functions).
Usage
plotLipids(msobject, span = 0.4, ppm = 10, verbose = TRUE)
Arguments
msobject |
annotated msobject. |
span |
smoothing parameter. Numeric value between 0 and 1. |
ppm |
mz tolerance for EIC. If set to 0, the EIC will not be shown. |
verbose |
print information messages. |
Details
Peak intensities are relative to the maximum intensity of each peak to ease visualization.
Grey lines show the the extracted ion chromatograms for the peaks.
Value
msobject with a plots element which contains a list of plots. Plots on the left side represent raw values while plots on the left are smoothed or clean scans (MS2 in DDA).
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
[Package LipidMS version 3.0.5 Index]