LSPFP-package {LSPFP}

Lysate and Secretome Peptide Feature Plotter

Description

Creates plots of peptides from shotgun proteomics analysis of secretome and lysate samples. These plots contain associated protein features and scores for potential secretion and truncation.

Details

The DESCRIPTION file:

Package:	LSPFP
Type:	Package
Title:	Lysate and Secretome Peptide Feature Plotter
Version:	1.0.3
Date:	2020-05-11
Author:	Rafael Dellen, with contributions of Fabian Kruse
Maintainer:	Gereon Poschmann <[e-mail]>
Description:	Creates plots of peptides from shotgun proteomics analysis of secretome and lysate samples. These plots contain associated protein features and scores for potential secretion and truncation.
License:	GPL-3
Depends:	seqinr, RCurl, data.table, bit64
Imports:	R.utils, graphics, grDevices, stats, utils
NeedsCompilation:	no
Packaged:	2016-05-19 10:46:48 UTC; dellen
Repository:	CRAN
Date/Publication:	2016-05-19 16:35:29
RoxygenNote:	6.1.1

Index of help topics:

LSPFP-package           Lysate and Secretome Peptide Feature Plotter
printSelectedPeptides   Only print peptides
wrapperLSPFP            wrapperLSPFP

The package offers two functions. Please have a look at wrapperLSPFP and printSelectedPeptides for details.

Author(s)

Rafael Dellen, with contributions of Fabian Kruse

Maintainer: Gereon Poschmann <[e-mail]>

Examples

#Please have a look at wrapperLSPFP for an example.