singlefusionplot {LSD} | R Documentation |
Visualize two-dimensional data clusters (add to an existing plot)
Description
Depict a numeric matrix or list utilizing the underlying distribution quantiles of one dimension in a color encoded fashion (add to an existing plot).
Usage
singlefusionplot(
x,
y,
fromto = c(0.05, 0.95),
colpal = "standardheat",
simulate = FALSE,
daltonize = FALSE,
cvd = "p",
nrcol = 25,
outer.col = "grey",
rev = FALSE,
alpha = NULL,
quartiles.col = c("grey", "black", "grey"),
add.quartiles = TRUE
)
Arguments
x |
a numeric vector. |
y |
a numeric vector. |
fromto |
a numeric vector containing the range of quantiles (between 0 and 1) to be plotted. |
colpal |
a character vector containing R built-in color names or a name of a |
simulate |
logical: if |
daltonize |
logical: if |
cvd |
character string implying the type of color vision deficiency ("p" for protanope, "d" for deuteranope or "t" for tritanope). |
nrcol |
a non-negative integer specifying the number of colors to be used (defaults to 25, if not specified). |
outer.col |
R built-in color to be used for outlier lines (lines outside of 'fromto'). |
rev |
logical: if |
alpha |
alpha value: a two-digit integer between 01 and 99 for color opacity, i.e. appearance of partial or full transparency (usage omitted by default). |
quartiles.col |
a character vector containing three R built-in colors for quartile lines (c('0.25','0.5','0.75')). |
add.quartiles |
logical: if |
Author(s)
Achim Tresch, Bjoern Schwalb
See Also
fusionplot
, align
, demotour
, disco
, colorpalette
Examples
x = 1:1000/300
y = rnorm(1000)+sin(2*x)*3
emptyplot(xlim = range(x),ylim = range(y))
singlefusionplot(x,y,colpal = "ylgnbu")
axis(1)
axis(2)
box()