LIMCoralRockall {LIM} | R Documentation |
Linear inverse model specification for the Deep-water Coral food web at Rockall Bank
Description
Linear inverse model specification for the deep-water coral ecosystem at Rockall Bank, North-East Atlantic. See van Oevelen et al. (2009)
Units of the flows are mmol C/m2/day
The linear inverse model LIMCoralRockall is generated from the file
‘CWCRockall.input’ which can be found in
subdirectory /examples/FoodWeb
of the package directory
Usage
data(LIMCoralRockall)
Format
a list of matrices, vectors, names and values that specify the linear inverse model problem.
see the return value of Setup
for more information about
this list
A more complete description of this structure is in vignette("LIM")
Author(s)
Dick van Oevelen <dick.vanoevelen@nioz.nl>
Karline Soetaert <karline.soetaert@nioz.nl>
References
van Oevelen, Dick, Gerard Duineveld, Marc Lavaleye, Furu Mienis, Karline Soetaert, and Carlo H. R. Heip, 2009.
The cold-water coral community as hotspot of carbon cycling on continental margins: A food web analysis from Rockall Bank (northeast Atlantic). Limnology and Oceangraphy 54 : 1829 – 1844.
http://www.aslo.org/lo/toc/vol_54/issue_6/1829.pdf
See Also
browseURL(paste(system.file(package="LIM"), "/examples/Foodweb/", sep=""))
contains "CWCRockall.input", the input file; read this with Setup
LIMTakapoto
, LIMRigaSummer
and many others
Examples
Coral <- Flowmatrix(LIMCoralRockall)
plotweb(Coral, main = "Deep Water Coral Foodweb, Rockall Bank",
sub = "mmolC/m2/day", lab.size = 0.8)
## Not run:
xr <- LIMCoralRockall$NUnknowns
i1 <- 1:(xr/2)
i2 <- (xr/2+1):xr
pm <- par(mfrow = c(1, 1))
Simplest <- Ldei(LIMCoralRockall)$X
Ranges <- Xranges(LIMCoralRockall)
Plotranges(Ranges[i1, 1], Ranges[i1, 2], Simplest[i1], lab.cex = 0.7,
main = "Deep Water Coral - ranges part 1")
Plotranges(Ranges[i2, 1], Ranges[i2, 2], Simplest[i2], lab.cex = 0.7,
main = "Deep Water Coral - ranges part 2")
par(mfrow = pm)
## End(Not run)