throat.tree {LDM}

UPGMA tree of the OTUs from 16S sequencing of the throat microbiome samples

Description

The OTU tree is constructed using UPGMA on the K80 distance matrix of the OTUs. It is a rooted tree of class "phylo".

Usage

data("throat.tree")

Format

List of 4 data frames.

Source

Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010) Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers. PLoS ONE 5(12): e15216.

References

R package "GUniFrac"

Examples

data(throat.tree)