LDA_table {LDAcoop}

LDA_table

Description

show table with activities and clonogenic survival from limiting dilution assay (LDA) data.

Usage

LDA_table(x, ref_class = "unknown", uncertainty = "act")

Arguments

x

numeric data.frame or matrix with at least three columns (cells, wells, positive wells, group (optional))

ref_class

name of reference class for calculation of SF values

uncertainty

method for calculating the uncertainty bands of survival fractions ("act" (default) for combining the activity confidence intervals; "ep" for error propagation via first order Taylor series expansion.)

Value

table

Examples

x <- data.frame("cells" = c(10,50,100,250,10,50,100,250),
                "wells" = rep(25,8),
                "positive" = c(2,5,10,20,1,2,6,11),
                "group" = c(rep("A",4),rep("B",4)))
LDA_table(x,ref_class = "A")