LDA_activity {LDAcoop}

LDA_activity

Description

calculation of clonogenic activities from data collected in a limiting dilution assay (LDA) experiment (i.e. cells, wells, positive wells, group).

Usage

LDA_activity(x, name = "LDA cells")

Arguments

x

numeric data.frame or matrix with three columns (cells, wells, positive wells, group (optional))

name

optional: experiment name (e.g. name of cell line)

Value

list object with LDA-activities as returned by LDA_activity_single

Examples

x <- data.frame("cells" = c(10,50,100,250,10,50,100,250),
                "wells" = rep(25,8),
                "positive" = c(2,5,10,20,1,2,6,11),
                "group" = c(rep("A",4),rep("B",4)))
act <- LDA_activity(x)