kog.ft {KOGMWU}

One-tailed Fisher's exact test for KOG enrichment.

Description

Accessory function to kog.mwu()

Usage

kog.ft(gos)

Arguments

gos

A dataframe with three columns, 'seq' (gene id),'term' (KOG class) and 'value' (either 0 or 1, indicating significance).

Value

A dataframe with three columns: 'term', 'nseqs', 'pval' and 'padj'

Author(s)

Mikhail V. Matz

References

Dixon GB, Davies SW, Aglyamova GA, Meyer E, Bay LK and Matz MV (2015) Genomic determinants of coral heat tolerance across latitudes.