| nullcov {IntegratedJM} | R Documentation |
nullcov
Description
The nullcov function is called while fitting the model when there no covariate is specified in the fitJM function. It returns a data.frame containing the results after fitting the model. The output of this function is also the output of the fitJM function.
Usage
nullcov(dat, responseVector, methodMultTest, data_type)
Arguments
dat |
Contains the gene expression data matrix for all the genes - can be a matrix or an expression set. |
responseVector |
Vector containing the bio-activity data. |
methodMultTest |
Character string to specify the multiple testing method. Default is the BH-FDR method. |
data_type |
Binary, specifying the type of the parameter dat: 0 - expressionSet, 1 - matrix. |
Details
Fits the model using gls, calculates the correlation, p-values, adjusted p-values (based on the multiple testing method) and logratio from LRT and returns the required results.
Value
A data frame, containing the results of the model - same as the output of the fitJM function.
Examples
## Not run:
nullcov(dat=gene_eset,responseVector=activity,methodMultTest='fdr',data_type=0)
## End(Not run)