R: Plot function for ion selective electrode characterisation...

plot.analyseISE {ISEtools}

R Documentation

Plot function for ion selective electrode characterisation and estimation of sample concentrations

Description

Plots sample concentration estimates derived from Bayesian calibration. E.g. analyseISE uses Bayesian calibration to estimate parameters for y = a + b log(x + c) + error, where error follows a normal distribution with mean 0 and standard deviation sigma. These valus are combined with experimental data to estimate sample concentrations.

Usage

## S3 method for class 'analyseISE'
plot(x, xlab = "Sample ID",
  ylab = expression(paste(log[10], " { ", italic(x), " }")), xlim = NA,
  ylim = c(-15, 0), x.ticks = NA, y.ticks = NA, x.ticks.label = TRUE,
  y.ticks.label = TRUE, y.las = 2, col = 1, x.shift = 0, xaxs = "r",
  yaxs = "r", add.box = TRUE, ...)

Arguments

`x`	Calibration and experimental sample results (of class 'analyseISE'; see analyseISE)
`xlab`	Label for the x-axis
`ylab`	Label for the y-axis
`xlim`	Limits for the x-axis. Automatically calculated if xlim = NA.
`ylim`	Limits for the y-axis.
`x.ticks`	Location of tickmarks for the x-axis. Automatically calculated if x.ticks = NA.
`y.ticks`	Location of tickmarks for the y-axis. Automatically calculated if y.ticks = NA.
`x.ticks.label`	Labels associated with x-axis tickmarks for the x-axis. Automatically calculated labels (TRUE), no labels (FALSE), or a column of text specifying custom labels (e.g. x.ticks.label = c("A", "B", "C") or similar, of the same length as x.ticks).
`y.ticks.label`	Labels associated with y-axis tickmarks for the y-axis. See x.ticks.label for details.
`y.las`	Indicates whether y-axis labels be perpendicular to the y-axis (2) or parallel to it (0).
`col`	Colour for the field of the plot.
`x.shift`	Shifts the plots to the left (- values) or right (+ values); useful for overlaying figures.
`xaxs`	The style of x-axis interval. See par for further details, but "r" adds 4 percent padding, "i" has no padding.
`yaxs`	The style of y-axis interval. See xaxs above.
`add.box`	Indicates whether a box should be drawn around the plot (TRUE) or not (FALSE).
`...`	Other arguments to be passed through to plotting functions.

Value

No return value, creates plot.

Author(s)