save.plots {IPCAPS} | R Documentation |
Workflow to generate HTML files for all kinds of plots
Description
Generate HTML files and all image files (plots) from the result
of ipcaps
. The clustering result is shown as a tree rendering
by the online Google Organizational Chart library. Note that the Internet is
required to view the HTML files.
Usage
save.plots(output.dir)
Arguments
output.dir |
A result directory as the |
Details
After running, this function generates all plots and saves as image files in the
sub-directory 'images'. It calls save.plots.cluster.html
,
save.eigenplots.html
, and save.plots.label.html
to generate all HTML files.
Value
NULL
See Also
save.html
,
save.plots.cluster.html
,
save.eigenplots.html
,
and save.plots.label.html
Examples
# Importantly, bed file, bim file, and fam file are required
# Use the example files embedded in the package
BED.file <- system.file("extdata","ipcaps_example.bed",package="IPCAPS")
LABEL.file <- system.file("extdata","ipcaps_example_individuals.txt.gz",package="IPCAPS")
my.cluster <- ipcaps(bed=BED.file,label.file=LABEL.file,lab.col=2,out=tempdir())
#Here, to generate all plots and HTML files
save.plots.label.html(my.cluster$output.dir)
[Package IPCAPS version 1.1.8 Index]