| DengueSimR01 {IDSpatialStats} | R Documentation |
Simulated dataset of dengue transmission with basic reproductive number of 1
Description
Dataset simulated using an agent based model with a spatially heterogeneous population structure. Infectious agents were introduced resulting in agent to agent transmission. The distance between successive cases in a transmission chain were randomly drawn from a uniform distribution U(0,100). Each infectious agent resulted in a single transmission to another agent after a delay of 15 days, reflecting the generation time of dengue. There are 11 transmission chains, each with a different genotype. The genotypes are subdivided into four serotypes.
Usage
DengueSimR01
Format
Matrix with five columns representing the X and Y coordinates of infected individuals, the time of infection, the genotype of the infecting pathogen and the serotype of the infecting pathogen.
Author(s)
Justin Lessler and Henrik Salje