IDSL.CSA_MSPgenerator {IDSL.CSA}

IDSL.CSA MSP Generator

Description

This function creates standard .msp files that can also be used for Pepsearch.

Usage

IDSL.CSA_MSPgenerator(CSA_peaklist, msLevel, spectral_search_mode = "dda", 
spectral_search_mode_option = NA, number_processing_threads = 1)

Arguments

CSA_peaklist

A dataframe peaklist of co-detected peaks

spectral_search_mode

Type of analysis. spectral_search_mode = c("dda", "dia", "csa")

msLevel

MS level = c(1, 2)

spectral_search_mode_option

Secondary type of analysis. spectral_search_mode_option = c(NA, "rawddaspectra", "alignedtable")

number_processing_threads

Number of processing threads for multi-threaded processing

Value

A string of standard .msp file