CSA_workflow {IDSL.CSA}

CSA workflow

Description

This function executes the CSA workflow.

Usage

CSA_workflow(PARAM_CSA)

Arguments

PARAM_CSA

PARAM_CSA

Value

This module generates '.msp' files from DDA analysis.

Examples

s_path <- system.file("extdata", package = "IDSL.CSA")
SSh1 <- paste0(s_path,"/CSA_parameters.xlsx")
## To see the results, use a known folder instead of the `tempdir()` command
temp_wd <- tempdir()
temp_wd_zip <- paste0(temp_wd, "/idsl_csa_test_files.zip")
spreadsheet <- readxl::read_xlsx(SSh1, sheet = "CSA")
PARAM_CSA <- cbind(spreadsheet[, 2], spreadsheet[, 4])
download.file(paste0("https://github.com/idslme/IDSL.CSA/blob/main/",
                     "CSA_educational_files/idsl_csa_test_files.zip?raw=true"),
              destfile = temp_wd_zip, mode = "wb")
unzip(temp_wd_zip, exdir = temp_wd)
PARAM_CSA[2, 2] <- "NO"
PARAM_CSA[3, 2] <- "NO"
PARAM_CSA[5, 2] <- temp_wd
PARAM_CSA[8, 2] <- temp_wd
PARAM_CSA[9, 2] <- "NA"
PARAM_CSA[11, 2] <- temp_wd
## To ensure `PARAM_CSA` is consistent with the `CSA_workflow`
PARAM_CSA <- CSA_xlsxAnalyzer(PARAM_CSA)
##
CSA_workflow(PARAM_CSA)