PlotScatter {IDMIR}

PlotScatter

Description

Function "PlotScatter" is used to plot a scatter diagram.

Usage

PlotScatter(MiRNA_CRData,status.0='Alive',status.1='Dead',
TitleYlab_A='Risk Score',TitleYlab_B='Survival Time',TitleXlab='Rank',
TitleLegend_A='Risk Group',TitleLegend_B='Status',
color.A=c(low='blue',high='red'),color.B=c(status.0='blue',status.1='red'))

Arguments

MiRNA_CRData

A list includes a data frame with seven parts those are "sample", "status", "time", "target genes expression", "risk score", "group", and a data frame with five columns those are "Gene", "HR", "HR.95L", "HR.95H", "beta", and "P-value".

status.0

string. Code for event 0. Default is 'Alive'

status.1

string. Code for event 1. Default is 'Dead'

TitleYlab_A

string, y-lab title for figure A. Default is 'Riskscore'

TitleYlab_B

string, y-lab title for figure B. Default is 'Survival Time'

TitleXlab

string, x-lab title for figure B. Default is 'Rank'

TitleLegend_A

string, legend title for figure A. Default is 'Risk Group'

TitleLegend_B

string, legend title for figure B. Default is 'Status'

color.A

color for figure A. Default is low = 'blue', high = 'red'

color.B

color for figure B. Default is status.0 = 'blue', status.1 = 'red'

Value

A riskscore picture

Examples

# Obtain the example data
GEP<-GetData_Mirna("GEP")
survival<-GetData_Mirna("survival")
MiRNAs<-c("hsa-miR-21-5p","hsa-miR-26a-5p","hsa-miR-369-5p","hsa-miR-1238-3p","hsa-miR-10b-5p")
# Run the function
SingleMiRNA_CRData<-SingleMiRNA_CRModel(GEP,
"hsa-miR-21-5p",survival,cutoff.point=NULL)
PlotScatter(SingleMiRNA_CRData)
MutiMiRNA_CRData<-MutiMiRNA_CRModel(GEP,
MiRNAs,survival,cutoff.point=NULL)
PlotScatter(MutiMiRNA_CRData)