opt_subpath {ICDS}

opt_subpath

Description

'opt_subpath' Optimize interested subpathways.If the number of genes shared by the two pathways accounted for more than the Overlap ratio of each pathway genes,then combine two pathways.

Usage

opt_subpath(subpathdata, zz, overlap = 0.6)

Arguments

subpathdata

interested subpathways

zz

a vector of z-scores

overlap

Overlap ratio of each two pathway genes

Value

Optimized subpathway:the number of genes shared by any two pathways accounted for less than the Overlap ratio of each pathway genes.

Examples

zz<-GetExampleData("zzz")
subpathdata<-GetExampleData("subpathdata")
optsubpath<-opt_subpath(subpathdata,zz,overlap=0.6)