PlotSubpathway {ICDS} | R Documentation |
PlotSubpathway
Description
PlotSubpathway:plot a network graph when user input a list of gene
Usage
PlotSubpathway(
subpID,
pathway.name,
zz,
Pathway = "kegg",
layout = layout.fruchterman.reingold
)
Arguments
subpID |
gene list of a interested subpathway |
pathway.name |
name of the interested subpathway |
zz |
z-score of each gene |
Pathway |
the name of the pathway database |
layout |
The layout specification( |
Value
Network graph
Examples
require(graphite)
subpID<-unlist(strsplit("ACSS1/ALDH3B2/ADH1B/ADH1A/ALDH2/DLAT/ACSS2","/"))
pathway.name="Glycolysis / Gluconeogenesis"
zzz<- GetExampleData("zzz")
PlotSubpathway(subpID=subpID,pathway.name=pathway.name,zz=zzz)
[Package ICDS version 0.1.2 Index]