plotBPC {HiResTEC} | R Documentation |
plotBPC.
Description
plotBPC
will plot for each item of a list of result-ojects from getMultipleBPC the BPC traces and the spectrum at the scan where the summed intensity of all ions is max.
Usage
plotBPC(
bpc = NULL,
mfrow = NULL,
skip_plots = NULL,
ylim = NULL,
col = NULL,
ids = NULL,
type = "both",
ann = c("mdev", "mz", "none")
)
Arguments
bpc |
A bpc object (list of intensity matrixes, rt x mz, including several attributes as attached by getMultipleBPC). |
mfrow |
Specify mfrow explicitely (is optimized internally if NULL to cover n=length(bpc)). |
skip_plots |
Allows to block certain subplots in the mfrow matrix to bettern align replicates. |
ylim |
Can be specified specifically, will be adjusted to overall min/max otherwise. |
col |
Specific color vector for masses may be provided. |
ids |
Specific plot ids may be explicitely provided. |
type |
Switch between co-plot of BPC and Spectrum ("both") or BPC alone ("bpc"). |
ann |
Select value to annotate peaks in spectrum. Usually the mass deviation from the expected value in mDa. |
Details
not yet
Value
A plot to the graphics device and NULL as invisible.
Examples
# load example raw data
data(res_list)
plotBPC(bpc = res_list[[1]][["bpc"]][c(1:2, 13:14)])
plotBPC(bpc = res_list[[1]][["bpc"]][c(1:2, 13:14)], ann="mz")