JPTtriallelicsChrX {HardyWeinberg}

Tri-allelic variants on the X-chromosome of the Japanese (JPT) sample of the 1000 genomes project

Description

JPTtriallelicsChrX contains five selected tri-allelic variants on the X chromosome from the Japanese sample of the 1000 genomes project.

Usage

data("JPTtriallelicsChrX")

Format

A data frame with 5 observations on the following 12 variables.

id

Identifier of the polymorphism

pos

Position of the polymorphism in base pairs

chr

Chromosome

A

Number of males with A genotype

B

Number of males with B genotype

C

Number of males with C genotype

AA

Number of AA females

AB

Number of AB females

AC

Number of AC females

BB

Number of BB females

BC

Number of BC females

CC

Number of CC females

Source

The The 1000 genomes project.

References

Graffelman, J. and Weir, B.S. (2017) Multi-allelic exact tests for Hardy-Weinberg equilibrium that account for gender. doi: 10.1101/172874. Table 6.

Examples

data(JPTtriallelicsChrX)
str(JPTtriallelicsChrX)