cip.2 {HWEintrinsic}

Graph of the Conditional Intrinsic Prior for a Two Alleles Dataset

Description

This function produces the 3D plot for the conditional intrinsic prior based on a sample of two alleles data as described in Consonni et al. (2011).

Usage

  cip.2(t, p, k = 30)

Arguments

t

training sample size.

p

allele frequency used to condition the prior upon.

k

number of grid points for the alleles frequencies at which the prior is evaluated.

Value

No object is returned by this function.

Note

This function provides the plot of the conditional intrinsic prior only for two alleles data.

Author(s)

Sergio Venturini [e-mail]

References

Consonni, G., Moreno, E., and Venturini, S. (2011). "Testing Hardy-Weinberg equilibrium: an objective Bayesian analysis". Statistics in Medicine, 30, 62–74. https://onlinelibrary.wiley.com/doi/10.1002/sim.4084/abstract

See Also

ip.2, plot-methods.

Examples

## Not run: 
# ATTENTION: the following code may take a long time to run! #

### The following code reproduces Figure 1 in Consonni et al. (2011) ###
p <- 0.5
t <- 5
cip.2(t, p, 30)
t <- 30
cip.2(t, p, 50)

## End(Not run)