physeq_format {HTSSIP}

Checking format of phyloseq object for HTSSIP compatibility

Description

Checking format of phyloseq object for HTSSIP compatibility

Usage

physeq_format(physeq)

Arguments

physeq

Phyloseq object

Value

phyloseq object

Examples

# this data should be formatted for HTSSIP
data(physeq_S2D2)
physeq_format(physeq_S2D2)

# this data should NOT be correctly formatted for HTSSIP
## Not run: 
library(phyloseq)
data(GlobalPatterns)
tryCatch(
 physeq_format(GlobalPatterns),
 function(e) e
 )
 
## End(Not run)