plot_peptide_sig_tp {HDXBoxeR} | R Documentation |
Significant peptide plots.
Description
Returns plot where significant peptides are colored in blue-red scheme.
Usage
plot_peptide_sig_tp(
df1,
replicates = 3,
nb_pep_row = 100,
ranges = c(-Inf, seq(-30, 30, by = 10), Inf),
pv_cutoff = 0.01
)
Arguments
df1 |
average data frame. Generated using ave_timepoint() function. |
replicates |
number of replicates in sample. Default set to 3. |
nb_pep_row |
number of peptides in each row. Plotting parameter. Default set to 100. |
ranges |
ranges for coloring scheme. Default set to c(-Inf, seq(-30, 30, by=10), Inf) |
pv_cutoff |
p-value cutoff here set up to 0.01 |
Value
plot with peptides which are significantly different between sets.
[Package HDXBoxeR version 0.0.1 Index]