plot_peptide_sig_tp {HDXBoxeR}

Significant peptide plots.

Description

Returns plot where significant peptides are colored in blue-red scheme.

Usage

plot_peptide_sig_tp(
  df1,
  replicates = 3,
  nb_pep_row = 100,
  ranges = c(-Inf, seq(-30, 30, by = 10), Inf),
  pv_cutoff = 0.01
)

Arguments

df1

average data frame. Generated using ave_timepoint() function.

replicates

number of replicates in sample. Default set to 3.

nb_pep_row

number of peptides in each row. Plotting parameter. Default set to 100.

ranges

ranges for coloring scheme. Default set to c(-Inf, seq(-30, 30, by=10), Inf)

pv_cutoff

p-value cutoff here set up to 0.01

Value

plot with peptides which are significantly different between sets.