plot_heat_map_max_uptake_tp {HDXBoxeR} | R Documentation |
Plots heat maps for maximum uptake per residue.
Description
Returns heat map with maximum uptake per residue.
Usage
plot_heat_map_max_uptake_tp(
df,
replicates = 3,
mar_x = 3.5,
ranges = c(-Inf, seq(-30, 30, by = 10), Inf),
pv_cutoff = 0.01
)
Arguments
df |
average data frame. Generated using ave_timepoint() function. |
replicates |
number of replicates in sample. Default set to 3. |
mar_x |
margin x width. Default=3.5 |
ranges |
ranges for coloring scheme. Default set to c(-Inf, seq(-30, 30, by=10), Inf) |
pv_cutoff |
p-value cutoff here set up to 0.01 |
Value
heat map for maximum uptake per residue
Examples
file_nm<-system.file("extdata", "All_results_table.csv", package = "HDXBoxeR")
a<- output_tp(file_nm)
plot_heat_map_max_uptake_tp(df=a, replicates=3, pv_cutoff=0.01,
ranges=c(-Inf,-40, -30,-20,-10, 0,10, 20,30,40, Inf) )
plot_heat_map_max_uptake_tp(df=a)
[Package HDXBoxeR version 0.0.1 Index]