all_summary {HDXBoxeR}

Returns full summary table.

Description

Returns summary data. Function returns: Protein states, timepoints, number of replicates, # peptides, % coveregae, average peptide length and redundancy. backexchange calculations (average and range), Critical interval and standard deviation. Function requires undeuterated and Fully deuterated sets marked in Deut.time as 0s and FD respectively.

Usage

all_summary(filepath, replicates = 3, Dfact = 0.85)

Arguments

filepath

filepath to the input file. Input file is All_results table from HDX_Examiner, where all the fields are marked for export.

replicates

number of replicates. Default set to 3.

Dfact

Dfact is the fraction of D/H in the labeling buffer used. Default set up to 0.85

Value

Returns summary table.

Examples

file_nm<-system.file("extdata", "All_results_table.csv", package = "HDXBoxeR")
a<- all_summary(file_nm, replicates=3, Dfact=0.85)