volcanoGsea {GseaVis}

volcanoGsea

Description

volcanoGsea

Usage

volcanoGsea(
  data = NULL,
  NES.cutoff = 1,
  pvalue.cutoff = NULL,
  p.adjust.CUTOFF = 0.05,
  nudge.y = c(0, 0),
  topN = 5,
  point.size = 3,
  point.color = c("#CC3333", "#CCCCCC", "#0099CC"),
  ...
)

Arguments

data

GSEA enrich object from clusterProfiler, defalut is NULL.

NES.cutoff

NES cutoff to select significant terms, defalut is 1.

pvalue.cutoff

pvalue cutoff to select significant terms, defalut is NULL.

p.adjust.CUTOFF

adjusted pvalue cutoff to select significant terms, defalut is 0.05.

nudge.y

y shift to ajust label, defalut is c(0,0).

topN

top term to show, defalut is 5.

point.size

point size, defalut is 3.

point.color

point color, defalut is c('#CC3333','#CCCCCC','#0099CC').

...

other arguments passed by geom_text_repel.

Value

a ggplot object.

Author(s)

Jun Zhang