dotplotGsea {GseaVis}

dotplotGsea

Description

dotplotGsea

Arguments

data

GSEA enrich object from clusterProfiler, defalut is NULL.

pval

pvalue cutoff to select significant terms, defalut is NULL.

pajust

adjusted pvalue cutoff to select significant terms, defalut is 0.05.

order.by

the X axis, defalut is "GeneRatio".

str.width

the width of term name, defalut is 50.

base_size

theme base size, defalut is 12.

topn

show the top terms, defalut is NULL.

scales

facet scales, defalut is "free_x".

add.seg

whether add segment line to point, defalut is "FALSE".

line.col

segment line color, defalut is "grey80".

line.size

segment line size, defalut is 1.5.

line.type

segment line type, defalut is "solid".

Value

a ggplot object.

Author(s)

Jun Zhang