ghmap {Grouphmap}

Grouphmap: Automated one-step common analysis of Batch expression profile

Description

Grouphmap: Automated one-step common analysis of Batch expression profile

Usage

ghmap(Path, conRep, treRep, OrgDb, TYPE, UP = TRUE, cutree, TOP)

Arguments

Path

"File storage path." Two groups are one file, and the control group should before the treatment group.

conRep

Number of repetitions in control group.

treRep

Number of repetitions in treatment group.

OrgDb

org.Mm.eg.db, org.Hs.eg.db, and org.Sc.sgd.db. Please library().

TYPE

"SYMBOL","ENSEMBOL"...

UP

up is TRUE and down is FALSE

cutree

heatmap can be devided multiple modules that make the functional difference and similarity of those group to be obvious

TOP

the numeric.Such as 10 is the top 10 of GO analysis in each file.

Value

p1

Examples

library(org.Mm.eg.db)
Path<-system.file("extdata", package = "Grouphmap")
ghmap(Path,2,2,org.Mm.eg.db,"ENSEMBL",FALSE,2,10)