reduce_overlap {GOplot} | R Documentation |
Eliminates redundant terms.
Description
The function eliminates all terms with a gene overlap >= set
threshold (overlap
) The reduced dataset can be used to improve the
readability of plots such as GOBubble
and GOBar
Usage
reduce_overlap(data, overlap)
Arguments
data |
A data frame created with |
overlap |
Skalar indicating the threshold for gene overlap (default = 0.75). |
Details
The function is currently very slow.
Examples
## Not run:
# Load the included dataset
data(EC)
# Building the circ object
circ <- circle_dat(EC$david, EC$genelist)
# Eliminate redundant terms
reduced_circ <- reduce_overlap(circ)
# Plot reduced data
GOBubble(reduced_circ)
## End(Not run)
[Package GOplot version 1.0.2 Index]