graphKappa {GIMMEgVAR}

GIMMEgVAR: GraphGIMMEgVAR

Description

Produces network graphs for beta and kappa matrices as .png files.

Usage

graphKappa(
  outputPathGIMMEgVAR,
  gimmeGVARThreshold,
  pathProportionKappa,
  lableNames,
  groupKappa
)

Arguments

outputPathGIMMEgVAR

Directory where network graphs will be saved.

gimmeGVARThreshold

The cutoff value for group-level paths. Defaults to .50, indicating that a path must be non-zero across >= .50 included as a group-level path.

pathProportionKappa

The proportion of individuals identified as having a path in the Kappa matrix. Used to determine group-level paths in the final group Kappa network.

lableNames

Vector of names used to label nodes in Network graph. Defaults to variable names if no vector is supplied.

groupKappa

Matrix that identifies the presence of a group path in the Kappa matrix. 0 indicates no group path present, 1 indicates group path present.

Details

Group and individual network paths are overlayed to form a single network graph for each matrix, respectively.

Kappa matrix is depicted using solid lines, beta network is depicted using dashed lines. In both networks, group paths appear as black lines. Individual paths appear as light grey lines.

For individual paths, line thickness is weighted by the proportion of individuals with paths present.