| PubMed.search {GEInfo} | R Documentation |
Search prior counts for G variables and G-E interactions
Description
Provide an available tool for mining prior counts for G variables and G-E interactions from PubMed database.
Usage
PubMed.search(Yname, Gname, Ename, Gnamefile)
Arguments
Yname |
A user supplied character including disease name such as "breast". |
Gname |
A user supplied character vector including all G variable names. |
Ename |
A user supplied character vector including all E variable names. |
Gnamefile |
A newline-delimited text file uploaded by users that contains all the G variable names to be searched. Each row represents a G variable name. It provides another way to input G variable names besides from argument "Gname". |
Value
Return the searched frequencies.
G.count |
A numeric vector, presenting the prior counts for all searched G variables. |
GE.count |
A numeric matrix of dimensions length(Gname) x length(Ename), which presents the prior counts for all G variables (Gname) and E variables (Ename) comparisons |
Examples
Yname <- c('breast')
Gname <- c('CAMP')
Ename <- c('Age')
res <- PubMed.search(Yname,Gname,Ename)
res