RDA_outputs_synthesis {GABB} | R Documentation |
RDA_outputs_synthesis function
Description
This function facilitate output analysis of vegan package RDA.
Usage
RDA_outputs_synthesis(RDA, RDA.synth, RDA.anova, nbperms, RDA.Table)
Arguments
RDA |
The RDA object : RDA <- vegan::rda(mtcars_quant~gear+carb,data=mtcars) |
RDA.synth |
TRUE or FALSE. If TRUE, displays the RDA model's global variance partitioning. Default is TRUE. |
RDA.anova |
TRUE or FALSE. If TRUE, prints the results of the vegan function anova.cca, displaying the variance partitioning by terms in the RDA model. Default is TRUE. |
nbperms |
Numeric number of permutations used by the RDA.anova function. Default is 1000. |
RDA.Table |
TRUE or FALSE. TRUE : calculate and display the variance percentage of considered factor / total unconstrained variance. Default : TRUE. |
Value
Results can be displayed in the console. Outputs are saved in data frame.
Examples
library(vegan)
my.RDA <- vegan::rda(mtcars[,1:7]~vs+am+gear, data=mtcars)
RDA_outputs_synthesis(RDA = my.RDA, RDA.synth = TRUE, RDA.anova = FALSE, RDA.Table = TRUE)
[Package GABB version 0.3.8 Index]