homo.panel {Fragman} | R Documentation |
complementary tools
Description
This functions takes a list of positions, heights and weights for ssr calls of a certain plant and uses panel information and a window to homogenize the weights of base pairs to the panel calls provided.
Usage
homo.panel(x, panel, window)
Arguments
x |
list of positions, heights and weights |
panel |
different dna sizes usually obtained by using overview and locator functions |
window |
window in base pairs indicating when should be considered the same panel allele |
Details
No major details.
Value
If arguments are correct the function returns a list containing
- $pos
the index positions for the intensities
- $hei
the intensities for the fragments found
- $wei
the putative weights in base pairs based on the panel provided
References
Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.
Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.
Examples
#No example provided, internally working to round to the closest parent ssr call.
x <- 1:10