get.scores {Fragman}

complementary tools

Description

This function extracts the information from auto.score and score.easy functions and fits everything in a dataframe.

Usage

get.scores(my.scores, mark = "mark")

Arguments

my.scores

List of individuals which contains at the same time a list of positions, heights and weights for the fragment analysis

mark

A vector of names of the markers scored in the panel or the parents

Details

Nomajor details.

Value

If arguments are correct the function returns a data frame containing

$da

A dataframe containing the ssr calls

References

Covarrubias-Pazaran G, Diaz-Garcia L, Schlautman B, Salazar W, Zalapa J. Fragman: An R package for fragment analysis. 2016. BMC Genetics 17(62):1-8.

Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.

Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.

Examples

## here "a" is a similar ouptput to the `score.easy` function
par1 <- list(pos=c(3100, 3240), hei=c(22917,20563), wei=c(202,212))
par2 <- list(pos=c(3100, 3240), hei=c(22917,20563), wei=c(202,214))
a <- list(i1=par1, i2=par2)
get.scores(a)