| createCovariateSettings {FeatureExtraction} | R Documentation |
Create covariate settings
Description
Create covariate settings
Usage
createCovariateSettings(
useDemographicsGender = FALSE,
useDemographicsAge = FALSE,
useDemographicsAgeGroup = FALSE,
useDemographicsRace = FALSE,
useDemographicsEthnicity = FALSE,
useDemographicsIndexYear = FALSE,
useDemographicsIndexMonth = FALSE,
useDemographicsPriorObservationTime = FALSE,
useDemographicsPostObservationTime = FALSE,
useDemographicsTimeInCohort = FALSE,
useDemographicsIndexYearMonth = FALSE,
useCareSiteId = FALSE,
useConditionOccurrenceAnyTimePrior = FALSE,
useConditionOccurrenceLongTerm = FALSE,
useConditionOccurrenceMediumTerm = FALSE,
useConditionOccurrenceShortTerm = FALSE,
useConditionOccurrencePrimaryInpatientAnyTimePrior = FALSE,
useConditionOccurrencePrimaryInpatientLongTerm = FALSE,
useConditionOccurrencePrimaryInpatientMediumTerm = FALSE,
useConditionOccurrencePrimaryInpatientShortTerm = FALSE,
useConditionEraAnyTimePrior = FALSE,
useConditionEraLongTerm = FALSE,
useConditionEraMediumTerm = FALSE,
useConditionEraShortTerm = FALSE,
useConditionEraOverlapping = FALSE,
useConditionEraStartLongTerm = FALSE,
useConditionEraStartMediumTerm = FALSE,
useConditionEraStartShortTerm = FALSE,
useConditionGroupEraAnyTimePrior = FALSE,
useConditionGroupEraLongTerm = FALSE,
useConditionGroupEraMediumTerm = FALSE,
useConditionGroupEraShortTerm = FALSE,
useConditionGroupEraOverlapping = FALSE,
useConditionGroupEraStartLongTerm = FALSE,
useConditionGroupEraStartMediumTerm = FALSE,
useConditionGroupEraStartShortTerm = FALSE,
useDrugExposureAnyTimePrior = FALSE,
useDrugExposureLongTerm = FALSE,
useDrugExposureMediumTerm = FALSE,
useDrugExposureShortTerm = FALSE,
useDrugEraAnyTimePrior = FALSE,
useDrugEraLongTerm = FALSE,
useDrugEraMediumTerm = FALSE,
useDrugEraShortTerm = FALSE,
useDrugEraOverlapping = FALSE,
useDrugEraStartLongTerm = FALSE,
useDrugEraStartMediumTerm = FALSE,
useDrugEraStartShortTerm = FALSE,
useDrugGroupEraAnyTimePrior = FALSE,
useDrugGroupEraLongTerm = FALSE,
useDrugGroupEraMediumTerm = FALSE,
useDrugGroupEraShortTerm = FALSE,
useDrugGroupEraOverlapping = FALSE,
useDrugGroupEraStartLongTerm = FALSE,
useDrugGroupEraStartMediumTerm = FALSE,
useDrugGroupEraStartShortTerm = FALSE,
useProcedureOccurrenceAnyTimePrior = FALSE,
useProcedureOccurrenceLongTerm = FALSE,
useProcedureOccurrenceMediumTerm = FALSE,
useProcedureOccurrenceShortTerm = FALSE,
useDeviceExposureAnyTimePrior = FALSE,
useDeviceExposureLongTerm = FALSE,
useDeviceExposureMediumTerm = FALSE,
useDeviceExposureShortTerm = FALSE,
useMeasurementAnyTimePrior = FALSE,
useMeasurementLongTerm = FALSE,
useMeasurementMediumTerm = FALSE,
useMeasurementShortTerm = FALSE,
useMeasurementValueAnyTimePrior = FALSE,
useMeasurementValueLongTerm = FALSE,
useMeasurementValueMediumTerm = FALSE,
useMeasurementValueShortTerm = FALSE,
useMeasurementRangeGroupAnyTimePrior = FALSE,
useMeasurementRangeGroupLongTerm = FALSE,
useMeasurementRangeGroupMediumTerm = FALSE,
useMeasurementRangeGroupShortTerm = FALSE,
useMeasurementValueAsConceptAnyTimePrior = FALSE,
useMeasurementValueAsConceptLongTerm = FALSE,
useMeasurementValueAsConceptMediumTerm = FALSE,
useMeasurementValueAsConceptShortTerm = FALSE,
useObservationAnyTimePrior = FALSE,
useObservationLongTerm = FALSE,
useObservationMediumTerm = FALSE,
useObservationShortTerm = FALSE,
useObservationValueAsConceptAnyTimePrior = FALSE,
useObservationValueAsConceptLongTerm = FALSE,
useObservationValueAsConceptMediumTerm = FALSE,
useObservationValueAsConceptShortTerm = FALSE,
useCharlsonIndex = FALSE,
useDcsi = FALSE,
useChads2 = FALSE,
useChads2Vasc = FALSE,
useHfrs = FALSE,
useDistinctConditionCountLongTerm = FALSE,
useDistinctConditionCountMediumTerm = FALSE,
useDistinctConditionCountShortTerm = FALSE,
useDistinctIngredientCountLongTerm = FALSE,
useDistinctIngredientCountMediumTerm = FALSE,
useDistinctIngredientCountShortTerm = FALSE,
useDistinctProcedureCountLongTerm = FALSE,
useDistinctProcedureCountMediumTerm = FALSE,
useDistinctProcedureCountShortTerm = FALSE,
useDistinctMeasurementCountLongTerm = FALSE,
useDistinctMeasurementCountMediumTerm = FALSE,
useDistinctMeasurementCountShortTerm = FALSE,
useDistinctObservationCountLongTerm = FALSE,
useDistinctObservationCountMediumTerm = FALSE,
useDistinctObservationCountShortTerm = FALSE,
useVisitCountLongTerm = FALSE,
useVisitCountMediumTerm = FALSE,
useVisitCountShortTerm = FALSE,
useVisitConceptCountLongTerm = FALSE,
useVisitConceptCountMediumTerm = FALSE,
useVisitConceptCountShortTerm = FALSE,
longTermStartDays = -365,
mediumTermStartDays = -180,
shortTermStartDays = -30,
endDays = 0,
includedCovariateConceptIds = c(),
addDescendantsToInclude = FALSE,
excludedCovariateConceptIds = c(),
addDescendantsToExclude = FALSE,
includedCovariateIds = c()
)
Arguments
useDemographicsGender |
Gender of the subject. (analysis ID 1) |
useDemographicsAge |
Age of the subject on the index date (in years). (analysis ID 2) |
useDemographicsAgeGroup |
Age of the subject on the index date (in 5 year age groups) (analysis ID 3) |
useDemographicsRace |
Race of the subject. (analysis ID 4) |
useDemographicsEthnicity |
Ethnicity of the subject. (analysis ID 5) |
useDemographicsIndexYear |
Year of the index date. (analysis ID 6) |
useDemographicsIndexMonth |
Month of the index date. (analysis ID 7) |
useDemographicsPriorObservationTime |
Number of continuous days of observation time preceding the index date. (analysis ID 8) |
useDemographicsPostObservationTime |
Number of continuous days of observation time following the index date. (analysis ID 9) |
useDemographicsTimeInCohort |
Number of days of observation time during cohort period. (analysis ID 10) |
useDemographicsIndexYearMonth |
Both calendar year and month of the index date in a single variable. (analysis ID 11) |
useCareSiteId |
Care site associated with the cohort start, pulled from the visit_detail, visit_occurrence, or person table, in that order. (analysis ID 12) |
useConditionOccurrenceAnyTimePrior |
One covariate per condition in the condition_occurrence table starting any time prior to index. (analysis ID 101) |
useConditionOccurrenceLongTerm |
One covariate per condition in the condition_occurrence table starting in the long term window. (analysis ID 102) |
useConditionOccurrenceMediumTerm |
One covariate per condition in the condition_occurrence table starting in the medium term window. (analysis ID 103) |
useConditionOccurrenceShortTerm |
One covariate per condition in the condition_occurrence table starting in the short term window. (analysis ID 104) |
useConditionOccurrencePrimaryInpatientAnyTimePrior |
One covariate per condition observed as a primary diagnosis in an inpatient setting in the condition_occurrence table starting any time prior to index. (analysis ID 105) |
useConditionOccurrencePrimaryInpatientLongTerm |
One covariate per condition observed as a primary diagnosis in an inpatient setting in the condition_occurrence table starting in the long term window. (analysis ID 106) |
useConditionOccurrencePrimaryInpatientMediumTerm |
One covariate per condition observed as a primary diagnosis in an inpatient setting in the condition_occurrence table starting in the medium term window. (analysis ID 107) |
useConditionOccurrencePrimaryInpatientShortTerm |
One covariate per condition observed as a primary diagnosis in an inpatient setting in the condition_occurrence table starting in the short term window. (analysis ID 108) |
useConditionEraAnyTimePrior |
One covariate per condition in the condition_era table overlapping with any time prior to index. (analysis ID 201) |
useConditionEraLongTerm |
One covariate per condition in the condition_era table overlapping with any part of the long term window. (analysis ID 202) |
useConditionEraMediumTerm |
One covariate per condition in the condition_era table overlapping with any part of the medium term window. (analysis ID 203) |
useConditionEraShortTerm |
One covariate per condition in the condition_era table overlapping with any part of the short term window. (analysis ID 204) |
useConditionEraOverlapping |
One covariate per condition in the condition_era table overlapping with the end of the risk window. (analysis ID 205) |
useConditionEraStartLongTerm |
One covariate per condition in the condition_era table starting in the long term window. (analysis ID 206) |
useConditionEraStartMediumTerm |
One covariate per condition in the condition_era table starting in the medium term window. (analysis ID 207) |
useConditionEraStartShortTerm |
One covariate per condition in the condition_era table starting in the short term window. (analysis ID 208) |
useConditionGroupEraAnyTimePrior |
One covariate per condition era rolled up to groups in the condition_era table overlapping with any time prior to index. (analysis ID 209) |
useConditionGroupEraLongTerm |
One covariate per condition era rolled up to groups in the condition_era table overlapping with any part of the long term window. (analysis ID 210) |
useConditionGroupEraMediumTerm |
One covariate per condition era rolled up to groups in the condition_era table overlapping with any part of the medium term window. (analysis ID 211) |
useConditionGroupEraShortTerm |
One covariate per condition era rolled up to groups in the condition_era table overlapping with any part of the short term window. (analysis ID 212) |
useConditionGroupEraOverlapping |
One covariate per condition era rolled up to groups in the condition_era table overlapping with the end of the risk window. (analysis ID 213) |
useConditionGroupEraStartLongTerm |
One covariate per condition era rolled up to groups in the condition_era table starting in the long term window. (analysis ID 214) |
useConditionGroupEraStartMediumTerm |
One covariate per condition era rolled up to groups in the condition_era table starting in the medium term window. (analysis ID 215) |
useConditionGroupEraStartShortTerm |
One covariate per condition era rolled up to groups in the condition_era table starting in the short term window. (analysis ID 216) |
useDrugExposureAnyTimePrior |
One covariate per drug in the drug_exposure table starting any time prior to index. (analysis ID 301) |
useDrugExposureLongTerm |
One covariate per drug in the drug_exposure table starting in the long term window. (analysis ID 302) |
useDrugExposureMediumTerm |
One covariate per drug in the drug_exposure table starting in the medium term window. (analysis ID 303) |
useDrugExposureShortTerm |
One covariate per drug in the drug_exposure table starting in the short term window. (analysis ID 304) |
useDrugEraAnyTimePrior |
One covariate per drug in the drug_era table overlapping with any time prior to index. (analysis ID 401) |
useDrugEraLongTerm |
One covariate per drug in the drug_era table overlapping with any part of the long term window. (analysis ID 402) |
useDrugEraMediumTerm |
One covariate per drug in the drug_era table overlapping with any part of the medium term window. (analysis ID 403) |
useDrugEraShortTerm |
One covariate per drug in the drug_era table overlapping with any part of the short window. (analysis ID 404) |
useDrugEraOverlapping |
One covariate per drug in the drug_era table overlapping with the end of the risk window. (analysis ID 405) |
useDrugEraStartLongTerm |
One covariate per drug in the drug_era table starting in the long term window. (analysis ID 406) |
useDrugEraStartMediumTerm |
One covariate per drug in the drug_era table starting in the medium term window. (analysis ID 407) |
useDrugEraStartShortTerm |
One covariate per drug in the drug_era table starting in the long short window. (analysis ID 408) |
useDrugGroupEraAnyTimePrior |
One covariate per drug rolled up to ATC groups in the drug_era table overlapping with any time prior to index. (analysis ID 409) |
useDrugGroupEraLongTerm |
One covariate per drug rolled up to ATC groups in the drug_era table overlapping with any part of the long term window. (analysis ID 410) |
useDrugGroupEraMediumTerm |
One covariate per drug rolled up to ATC groups in the drug_era table overlapping with any part of the medium term window. (analysis ID 411) |
useDrugGroupEraShortTerm |
One covariate per drug rolled up to ATC groups in the drug_era table overlapping with any part of the short term window. (analysis ID 412) |
useDrugGroupEraOverlapping |
One covariate per drug rolled up to ATC groups in the drug_era table overlapping with the end of the risk window. (analysis ID 413) |
useDrugGroupEraStartLongTerm |
One covariate per drug rolled up to ATC groups in the drug_era table starting in the long term window. (analysis ID 414) |
useDrugGroupEraStartMediumTerm |
One covariate per drug rolled up to ATC groups in the drug_era table starting in the medium term window. (analysis ID 415) |
useDrugGroupEraStartShortTerm |
One covariate per drug rolled up to ATC groups in the drug_era table starting in the short term window. (analysis ID 416) |
useProcedureOccurrenceAnyTimePrior |
One covariate per procedure in the procedure_occurrence table any time prior to index. (analysis ID 501) |
useProcedureOccurrenceLongTerm |
One covariate per procedure in the procedure_occurrence table in the long term window. (analysis ID 502) |
useProcedureOccurrenceMediumTerm |
One covariate per procedure in the procedure_occurrence table in the medium term window. (analysis ID 503) |
useProcedureOccurrenceShortTerm |
One covariate per procedure in the procedure_occurrence table in the short term window. (analysis ID 504) |
useDeviceExposureAnyTimePrior |
One covariate per device in the device exposure table starting any time prior to index. (analysis ID 601) |
useDeviceExposureLongTerm |
One covariate per device in the device exposure table starting in the long term window. (analysis ID 602) |
useDeviceExposureMediumTerm |
One covariate per device in the device exposure table starting in the medium term window. (analysis ID 603) |
useDeviceExposureShortTerm |
One covariate per device in the device exposure table starting in the short term window. (analysis ID 604) |
useMeasurementAnyTimePrior |
One covariate per measurement in the measurement table any time prior to index. (analysis ID 701) |
useMeasurementLongTerm |
One covariate per measurement in the measurement table in the long term window. (analysis ID 702) |
useMeasurementMediumTerm |
One covariate per measurement in the measurement table in the medium term window. (analysis ID 703) |
useMeasurementShortTerm |
One covariate per measurement in the measurement table in the short term window. (analysis ID 704) |
useMeasurementValueAnyTimePrior |
One covariate containing the value per measurement-unit combination any time prior to index. (analysis ID 705) |
useMeasurementValueLongTerm |
One covariate containing the value per measurement-unit combination in the long term window. (analysis ID 706) |
useMeasurementValueMediumTerm |
One covariate containing the value per measurement-unit combination in the medium term window. (analysis ID 707) |
useMeasurementValueShortTerm |
One covariate containing the value per measurement-unit combination in the short term window. (analysis ID 708) |
useMeasurementRangeGroupAnyTimePrior |
Covariates indicating whether measurements are below, within, or above normal range any time prior to index. (analysis ID 709) |
useMeasurementRangeGroupLongTerm |
Covariates indicating whether measurements are below, within, or above normal range in the long term window. (analysis ID 710) |
useMeasurementRangeGroupMediumTerm |
Covariates indicating whether measurements are below, within, or above normal range in the medium term window. (analysis ID 711) |
useMeasurementRangeGroupShortTerm |
Covariates indicating whether measurements are below, within, or above normal range in the short term window. (analysis ID 712) |
useMeasurementValueAsConceptAnyTimePrior |
One covariate per measurement-value concept combination any time prior to index. (analysis ID 713) |
useMeasurementValueAsConceptLongTerm |
One covariate per measurement-value concept combination in the long term window. (analysis ID 714) |
useMeasurementValueAsConceptMediumTerm |
One covariate per measurement-value concept combination in the medium term window. (analysis ID 715) |
useMeasurementValueAsConceptShortTerm |
One covariate per measurement-value concept combination in the short term window. (analysis ID 716) |
useObservationAnyTimePrior |
One covariate per observation in the observation table any time prior to index. (analysis ID 801) |
useObservationLongTerm |
One covariate per observation in the observation table in the long term window. (analysis ID 802) |
useObservationMediumTerm |
One covariate per observation in the observation table in the medium term window. (analysis ID 803) |
useObservationShortTerm |
One covariate per observation in the observation table in the short term window. (analysis ID 804) |
useObservationValueAsConceptAnyTimePrior |
One covariate per observation-value concept combination any time prior to index. (analysis ID 805) |
useObservationValueAsConceptLongTerm |
One covariate per observation-value concept combination in the long term window. (analysis ID 806) |
useObservationValueAsConceptMediumTerm |
One covariate per observation-value concept combination in the medium term window. (analysis ID 807) |
useObservationValueAsConceptShortTerm |
One covariate per observation-value concept combination in the short term window. (analysis ID 808) |
useCharlsonIndex |
The Charlson comorbidity index (Romano adaptation) using all conditions prior to the window end. (analysis ID 901) |
useDcsi |
The Diabetes Comorbidity Severity Index (DCSI) using all conditions prior to the window end. (analysis ID 902) |
useChads2 |
The CHADS2 score using all conditions prior to the window end. (analysis ID 903) |
useChads2Vasc |
The CHADS2VASc score using all conditions prior to the window end. (analysis ID 904) |
useHfrs |
The Hospital Frailty Risk Score score using all conditions prior to the window end. (analysis ID 926) |
useDistinctConditionCountLongTerm |
The number of distinct condition concepts observed in the long term window. (analysis ID 905) |
useDistinctConditionCountMediumTerm |
The number of distinct condition concepts observed in the medium term window. (analysis ID 906) |
useDistinctConditionCountShortTerm |
The number of distinct condition concepts observed in the short term window. (analysis ID 907) |
useDistinctIngredientCountLongTerm |
The number of distinct ingredients observed in the long term window. (analysis ID 908) |
useDistinctIngredientCountMediumTerm |
The number of distinct ingredients observed in the medium term window. (analysis ID 909) |
useDistinctIngredientCountShortTerm |
The number of distinct ingredients observed in the short term window. (analysis ID 910) |
useDistinctProcedureCountLongTerm |
The number of distinct procedures observed in the long term window. (analysis ID 911) |
useDistinctProcedureCountMediumTerm |
The number of distinct procedures observed in the medium term window. (analysis ID 912) |
useDistinctProcedureCountShortTerm |
The number of distinct procedures observed in the short term window. (analysis ID 913) |
useDistinctMeasurementCountLongTerm |
The number of distinct measurements observed in the long term window. (analysis ID 914) |
useDistinctMeasurementCountMediumTerm |
The number of distinct measurements observed in the medium term window. (analysis ID 915) |
useDistinctMeasurementCountShortTerm |
The number of distinct measurements observed in the short term window. (analysis ID 916) |
useDistinctObservationCountLongTerm |
The number of distinct observations observed in the long term window. (analysis ID 917) |
useDistinctObservationCountMediumTerm |
The number of distinct observations observed in the medium term window. (analysis ID 918) |
useDistinctObservationCountShortTerm |
The number of distinct observations observed in the short term window. (analysis ID 919) |
useVisitCountLongTerm |
The number of visits observed in the long term window. (analysis ID 920) |
useVisitCountMediumTerm |
The number of visits observed in the medium term window. (analysis ID 921) |
useVisitCountShortTerm |
The number of visits observed in the short term window. (analysis ID 922) |
useVisitConceptCountLongTerm |
The number of visits observed in the long term window, stratified by visit concept ID. (analysis ID 923) |
useVisitConceptCountMediumTerm |
The number of visits observed in the medium term window, stratified by visit concept ID. (analysis ID 924) |
useVisitConceptCountShortTerm |
The number of visits observed in the short term window, stratified by visit concept ID. (analysis ID 925) |
longTermStartDays |
What is the start day (relative to the index date) of the long-term window? |
mediumTermStartDays |
What is the start day (relative to the index date) of the medium-term window? |
shortTermStartDays |
What is the start day (relative to the index date) of the short-term window? |
endDays |
What is the end day (relative to the index date) of the window? |
includedCovariateConceptIds |
A list of concept IDs that should be used to construct covariates. |
addDescendantsToInclude |
Should descendant concept IDs be added to the list of concepts to include? |
excludedCovariateConceptIds |
A list of concept IDs that should NOT be used to construct covariates. |
addDescendantsToExclude |
Should descendant concept IDs be added to the list of concepts to exclude? |
includedCovariateIds |
A list of covariate IDs that should be restricted to. |
Details
creates an object specifying how covariates should be constructed from data in the CDM model.
Value
An object of type covariateSettings, to be used in other functions.
Examples
settings <- createCovariateSettings(
useDemographicsGender = TRUE,
useDemographicsAge = FALSE,
useDemographicsAgeGroup = TRUE,
useDemographicsRace = TRUE,
useDemographicsEthnicity = TRUE,
useDemographicsIndexYear = TRUE,
useDemographicsIndexMonth = TRUE,
useDemographicsPriorObservationTime = FALSE,
useDemographicsPostObservationTime = FALSE,
useDemographicsTimeInCohort = FALSE,
useDemographicsIndexYearMonth = FALSE,
useCareSiteId = FALSE,
useConditionOccurrenceAnyTimePrior = FALSE,
useConditionOccurrenceLongTerm = FALSE,
useConditionOccurrenceMediumTerm = FALSE,
useConditionOccurrenceShortTerm = FALSE,
useConditionOccurrencePrimaryInpatientAnyTimePrior = FALSE,
useConditionOccurrencePrimaryInpatientLongTerm = FALSE,
useConditionOccurrencePrimaryInpatientMediumTerm = FALSE,
useConditionOccurrencePrimaryInpatientShortTerm = FALSE,
useConditionEraAnyTimePrior = FALSE,
useConditionEraLongTerm = FALSE,
useConditionEraMediumTerm = FALSE,
useConditionEraShortTerm = FALSE,
useConditionEraOverlapping = FALSE,
useConditionEraStartLongTerm = FALSE,
useConditionEraStartMediumTerm = FALSE,
useConditionEraStartShortTerm = FALSE,
useConditionGroupEraAnyTimePrior = FALSE,
useConditionGroupEraLongTerm = TRUE,
useConditionGroupEraMediumTerm = FALSE,
useConditionGroupEraShortTerm = TRUE,
useConditionGroupEraOverlapping = FALSE,
useConditionGroupEraStartLongTerm = FALSE,
useConditionGroupEraStartMediumTerm = FALSE,
useConditionGroupEraStartShortTerm = FALSE,
useDrugExposureAnyTimePrior = FALSE,
useDrugExposureLongTerm = FALSE,
useDrugExposureMediumTerm = FALSE,
useDrugExposureShortTerm = FALSE,
useDrugEraAnyTimePrior = FALSE,
useDrugEraLongTerm = FALSE,
useDrugEraMediumTerm = FALSE,
useDrugEraShortTerm = FALSE,
useDrugEraOverlapping = FALSE,
useDrugEraStartLongTerm = FALSE,
useDrugEraStartMediumTerm = FALSE,
useDrugEraStartShortTerm = FALSE,
useDrugGroupEraAnyTimePrior = FALSE,
useDrugGroupEraLongTerm = TRUE,
useDrugGroupEraMediumTerm = FALSE,
useDrugGroupEraShortTerm = TRUE,
useDrugGroupEraOverlapping = TRUE,
useDrugGroupEraStartLongTerm = FALSE,
useDrugGroupEraStartMediumTerm = FALSE,
useDrugGroupEraStartShortTerm = FALSE,
useProcedureOccurrenceAnyTimePrior = FALSE,
useProcedureOccurrenceLongTerm = TRUE,
useProcedureOccurrenceMediumTerm = FALSE,
useProcedureOccurrenceShortTerm = TRUE,
useDeviceExposureAnyTimePrior = FALSE,
useDeviceExposureLongTerm = TRUE,
useDeviceExposureMediumTerm = FALSE,
useDeviceExposureShortTerm = TRUE,
useMeasurementAnyTimePrior = FALSE,
useMeasurementLongTerm = TRUE,
useMeasurementMediumTerm = FALSE,
useMeasurementShortTerm = TRUE,
useMeasurementValueAnyTimePrior = FALSE,
useMeasurementValueLongTerm = FALSE,
useMeasurementValueMediumTerm = FALSE,
useMeasurementValueShortTerm = FALSE,
useMeasurementRangeGroupAnyTimePrior = FALSE,
useMeasurementRangeGroupLongTerm = TRUE,
useMeasurementRangeGroupMediumTerm = FALSE,
useMeasurementRangeGroupShortTerm = TRUE,
useMeasurementValueAsConceptAnyTimePrior = FALSE,
useMeasurementValueAsConceptLongTerm = TRUE,
useMeasurementValueAsConceptMediumTerm = FALSE,
useMeasurementValueAsConceptShortTerm = TRUE,
useObservationAnyTimePrior = FALSE,
useObservationLongTerm = TRUE,
useObservationMediumTerm = FALSE,
useObservationShortTerm = TRUE,
useObservationValueAsConceptAnyTimePrior = FALSE,
useObservationValueAsConceptLongTerm = TRUE,
useObservationValueAsConceptMediumTerm = FALSE,
useObservationValueAsConceptShortTerm = TRUE,
useCharlsonIndex = TRUE,
useDcsi = TRUE,
useChads2 = TRUE,
useChads2Vasc = TRUE,
useHfrs = FALSE,
useDistinctConditionCountLongTerm = FALSE,
useDistinctConditionCountMediumTerm = FALSE,
useDistinctConditionCountShortTerm = FALSE,
useDistinctIngredientCountLongTerm = FALSE,
useDistinctIngredientCountMediumTerm = FALSE,
useDistinctIngredientCountShortTerm = FALSE,
useDistinctProcedureCountLongTerm = FALSE,
useDistinctProcedureCountMediumTerm = FALSE,
useDistinctProcedureCountShortTerm = FALSE,
useDistinctMeasurementCountLongTerm = FALSE,
useDistinctMeasurementCountMediumTerm = FALSE,
useDistinctMeasurementCountShortTerm = FALSE,
useDistinctObservationCountLongTerm = FALSE,
useDistinctObservationCountMediumTerm = FALSE,
useDistinctObservationCountShortTerm = FALSE,
useVisitCountLongTerm = FALSE,
useVisitCountMediumTerm = FALSE,
useVisitCountShortTerm = FALSE,
useVisitConceptCountLongTerm = FALSE,
useVisitConceptCountMediumTerm = FALSE,
useVisitConceptCountShortTerm = FALSE,
longTermStartDays = -365,
mediumTermStartDays = -180,
shortTermStartDays = -30,
endDays = 0,
includedCovariateConceptIds = c(),
addDescendantsToInclude = FALSE,
excludedCovariateConceptIds = c(),
addDescendantsToExclude = FALSE,
includedCovariateIds = c()
)