mirnapredata {ExpGenetic}

Base frequency distribution of small RNA (sRNA)

Description

Get the base frequency distribution table.

Usage

mirnapredata(sRNAseq)

Arguments

sRNAseq

Character. All sRNA sequences in vector format.

Value

A data frame. The output consists of three columns, i.e., base, base frequency and position.

Examples

#F1
F1_miRNA <- F1_miRNA_count[,1]
F1_bf <- mirnapredata(sRNAseq = F1_miRNA)
#output result
head(F1_bf)
#  Base Frequency Position
#1    A        32        1
#2    C        27        1
#3    G        31        1
#4    T       115        1
#5    A        27        2
#6    C        50        2