epiPred {EpiSemble}

Epigenetic Modification Prediction

Description

Predicting sequences with 6mA sites.

Usage

epiPred(FastaData,Species)

Arguments

FastaData

Sequence file (.fasta format)

Species

Model organism

Value

MethStatus: Sequences with their methylation state (methylated or non-methylated)

References

Chen, W., Lv, H., Nie, F., & Lin, H. (2019). i6mA-Pred: identifying DNA N6-methyladenine sites in the rice genome. Bioinformatics, 35(16), 2796-2800.

Examples

library(EpiSemble)
data<-system.file("exdata/test.fasta", package = "EpiSemble")
pred<-epiPred(FastaData=data, Species="Rice")