| envfascpp {EnvNJ} | R Documentation |
Convert Fasta Files into Environment Vectors
Description
Converts fasta files into environment vectors
Usage
envfascpp(path, r = 10, exefile, outfile)
Arguments
path |
path to the folder that contain a the file 'list.txt', which contains the names of all the fasta files to be analyzed (one per line). The fasta files must be in the same path. |
r |
a positive integer indicating the radius of the sequence segment considered as environment. |
exefile |
path to the directory containing the envfas executable. |
outfile |
path to, and name of, output file. |
Details
This function builds and write vectors representing the species' proteome. To use this function, you must first download the source code envfas.cpp (https://bitbucket.org/jcaledo/envnj/src/master/AncillaryCode/envfas.cpp) and compile it.
Value
A txt file per fasta file analyzed. Each txt file can be read as a vector. Thus the number of lines gives the dimension of the vector.
See Also
envnj(), fastaconc()
Examples
## Not run: envfastacpp("./data_t/list.txt", 10, ".", "./MyResults")