all_cluster_tissues {EMMIXgene}

Clusters tissues using all group means

Description

Clusters tissues using all group means

Usage

all_cluster_tissues(gen, clusters, q = 6, G = 2)

Arguments

gen

EMMIXgene object

clusters

mclust object

q

number of factors if using mfa

G

number of components if using mfa

Value

a clustering for each sample (columns) by each group(rows)

Examples

example <- plot_single_gene(alon_data,1) 
#only run on first 100 genes for speed
alon_sel <- select_genes(alon_data[seq_len(100), ]) 
alon_clust<- cluster_genes(alon_sel , 2)
alon_tissue_all<-all_cluster_tissues(alon_sel, alon_clust, q=1, G=2)