all_cluster_tissues {EMMIXgene} | R Documentation |
Clusters tissues using all group means
Description
Clusters tissues using all group means
Usage
all_cluster_tissues(gen, clusters, q = 6, G = 2)
Arguments
gen |
EMMIXgene object |
clusters |
mclust object |
q |
number of factors if using mfa |
G |
number of components if using mfa |
Value
a clustering for each sample (columns) by each group(rows)
Examples
example <- plot_single_gene(alon_data,1)
#only run on first 100 genes for speed
alon_sel <- select_genes(alon_data[seq_len(100), ])
alon_clust<- cluster_genes(alon_sel , 2)
alon_tissue_all<-all_cluster_tissues(alon_sel, alon_clust, q=1, G=2)
[Package EMMIXgene version 0.1.4 Index]