EMAS.manhattan {EMAS}

Plotting the manhattan plot from the EMAS results

Description

Function to plot a manhattan plot from the Emas results.

Usage

EMAS.manhattan(E.result, type = "EPIC", ...)

Arguments

E.result

A data.frame produced by Emas.

type

A character string indicating the type of annotation, only "EPIC" and "450k" are available.

...

Other arguments passed to manhattan.

Details

This function can plot a manhattan plot from the Emas results according to the annotation from 450k or EPIC.

Value

No return value, called for side effects.

Author(s)

Xiuquan Nie, [e-mail]

References

Turner, (2018). qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. Journal of Open Source Software, 3(25), 731. doi: 10.21105/joss.00731.

Examples

data(E.result)
EMAS.manhattan(E.result, type = "EPIC",
               genomewideline = -log10(0.05/2000),
               suggestiveline = -log10(1/100), ylim=c(0,5))