HyperParms {EDISON}

Sets up initial values of hyperparameters.

Description

This function initialises the variable HYPERvar with values for the various hyperparameters in the model.

Usage

HyperParms(options)

Arguments

options

MCMC settings, possibly from defaultOptions.

Value

Settings for the HYPERvar variable:

cD

Proportion of changepoint moves proposed.

alphaD

Prior settings for the number of changepoints.

betaD

Prior settings for the number of changepoints.

c

Ratio of changepoint birth/death moves proposed.

v0

Prior settings for the sigma squared parameters.

gamma0

Prior settings for the sigma squared parameters.

alphad2

Prior settings for the signal-to-noise ratio delta squared.

betad2

Prior settings for the signal-to-noise ratio delta squared.

alphalbd

Prior settings for the number of transcription factors.

betalbd

Prior settings for the number of transcription factors.

Author(s)

Sophie Lebre

Frank Dondelinger