R: Sets up initial values of hyperparameters.

HyperParms {EDISON}

R Documentation

Sets up initial values of hyperparameters.

This function initialises the variable HYPERvar with values for the various hyperparameters in the model.

HyperParms(options)

options

MCMC settings, possibly from defaultOptions.

Settings for the HYPERvar variable:

`cD`	Proportion of changepoint moves proposed.
`alphaD`	Prior settings for the number of changepoints.
`betaD`	Prior settings for the number of changepoints.
`c`	Ratio of changepoint birth/death moves proposed.
`v0`	Prior settings for the sigma squared parameters.
`gamma0`	Prior settings for the sigma squared parameters.
`alphad2`	Prior settings for the signal-to-noise ratio delta squared.
`betad2`	Prior settings for the signal-to-noise ratio delta squared.
`alphalbd`	Prior settings for the number of transcription factors.
`betalbd`	Prior settings for the number of transcription factors.

Sophie Lebre

Frank Dondelinger

[Package EDISON version 1.1.1 Index]