pathway_list {DysPIAData}

Gene pair based pathway lists.

Description

This data includes gene pair based pathway lists used in DysPIA. Based on the R package ‘graphite’(PMID: 22292714, PMID: 30184047), direct gene-gene regulations and metabolite based propagated gene-gene regulations were retrieved from the pathways in 8 public pathway databases for Homo sapiens (version 01/31/2020) which are Reactome (PMID: 18981052), KEGG (PMID: 9847135), BioCarta (https://doi.org/10.1089/152791601750294344), Panther (PMID: 23193289), PathBank (PMID: 31602464), NCI/Nature Pathway Interaction Database (PMID: 18832364), SMPDB (PMID: 24203708), and PharmGKB (PMID: 22992668). Totally, there are 333,484 gene pairs in 99,984 pathways. (data version: 01/31/2020)

Usage

data(pathway_list)