| plotTargetheatmap {DrugSim2DR} | R Documentation |
plotTargetheatmap
Description
The function "plotTargetheatmap" is used to plot a heat map of drug targets expression.
Usage
plotTargetheatmap(drugid,ExpData,label,significance=FALSE,
cluster.rows=FALSE,cluster.cols=FALSE,bk=c(-2.4,2.3),show.rownames=TRUE,
show.colnames=FALSE,ann_colors=c("#FFAA2C","#2CBADA"),col=c("#2A95FF","#FF1C1C"))
Arguments
drugid |
The drugbank ID of a drug. |
ExpData |
A gene expression profile of interest (rows are genes, columns are samples). |
label |
A character vector consists of "0" and "1" which represent sample class in the gene expression profile. "0" means normal sample and "1" means disease sample. |
significance |
This parameter controls whether the p-value of differential expression is displayed. |
cluster.rows |
Logical value that represents whether row clustering is used. |
cluster.cols |
Logical value that represents whether col clustering is used. |
bk |
This parameter adjusts the range of values displayed by the color bar. |
show.rownames |
This parameter controls whether row names are displayed. |
show.colnames |
This parameter controls whether column names are displayed. |
ann_colors |
Vector of colors used to define groups. |
col |
Vector of colors used in the heatmap. |
Value
A heat map of drug targets expression.
Examples
# Obtain the example data
GEP<-Gettest("GEP")
label<-Gettest("label")
# Run the function
plotTargetheatmap("DB00780",GEP,label)